SNP Report
Basic Infomation
| Name | rs12987295 dbSNP |
|---|---|
| Location | chr:2,103115838 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 58)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10172588 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10175045 | 0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10208027 | 0.86[YRI][hapmap] |
| rs11123934 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11676371 | 0.84[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11682754 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11687071 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11690932 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12712153 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12995030 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1403548 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1523198 | 0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1523199 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1523201 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2072508 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2072509 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2075187 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2075188 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2075189 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2075190 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2075191 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2075192 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2075193 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2310304 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4851012 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851013 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851014 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851015 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4851016 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851017 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes] |
| rs4851598 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851599 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851600 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851602 | 0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4851605 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4851606 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56249513 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6543150 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6543153 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6543154 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6543155 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6543156 | 0.84[YRI][hapmap] |
| rs6543157 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6705272 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6713906 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6728288 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6741235 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6741627 | 0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7566063 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7567885 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7568122 | 0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7573566 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7579846 | 0.85[YRI][hapmap] |
| rs7591101 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7591872 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7591878 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7593935 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7605606 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A4 | Proximal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ZNF124 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014