SNP Report

Basic Infomation

Name	rs10208027 dbSNP
Location	chr:2,103121372
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 57)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10166330	0.86[CHB][hapmap]
rs10172116	0.86[CHB][hapmap]
rs10173081	0.86[CHB][hapmap]
rs10176820	1.00[CHB][hapmap]
rs10181785	0.86[CHB][hapmap]
rs10197862	0.86[CHB][hapmap]
rs11687071	0.86[YRI][hapmap]
rs11687768	0.86[CHB][hapmap]
rs11690932	0.86[YRI][hapmap]
rs11887071	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11892768	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12053191	1.00[EUR][1000 genomes]
rs12053526	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12619343	1.00[EUR][1000 genomes]
rs12987295	0.86[YRI][hapmap]
rs13030642	0.86[CHB][hapmap]
rs13408569	0.86[CHB][hapmap]
rs13408661	0.86[CHB][hapmap]
rs13431828	0.86[CHB][hapmap]
rs1403552	0.86[CHB][hapmap]
rs17027029	0.86[CHB][hapmap]
rs2075186	0.86[CHB][hapmap]
rs2075192	0.84[YRI][hapmap]
rs2160201	0.86[CHB][hapmap]
rs2160203	0.86[CHB][hapmap]
rs2272127	0.86[CHB][hapmap]
rs2293223	0.86[CHB][hapmap]
rs28696001	1.00[EUR][1000 genomes]
rs2871478	1.00[EUR][1000 genomes]
rs3213733	0.86[CHB][hapmap]
rs3732127	0.86[CHB][hapmap]
rs3771158	0.86[CHB][hapmap]
rs3771161	0.86[CHB][hapmap]
rs3771164	0.86[CHB][hapmap]
rs3806580	1.00[EUR][1000 genomes]
rs4851606	0.85[YRI][hapmap]
rs57150829	1.00[EUR][1000 genomes]
rs57682906	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59038885	1.00[EUR][1000 genomes]
rs59642933	1.00[EUR][1000 genomes]
rs59771371	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60883579	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61086489	1.00[EUR][1000 genomes]
rs61731285	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6543156	1.00[CHB][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6543172	1.00[EUR][1000 genomes]
rs6543173	1.00[EUR][1000 genomes]
rs6728288	0.86[YRI][hapmap]
rs6755047	1.00[EUR][1000 genomes]
rs72997648	1.00[EUR][1000 genomes]
rs72997651	1.00[EUR][1000 genomes]
rs73944370	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73944371	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7576791	1.00[EUR][1000 genomes]
rs7579104	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7579846	1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7596181	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC9A4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)