SNP Report
Basic Infomation
| Name | rs10197862 dbSNP |
|---|---|
| Location | chr:2,102966549 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10166330 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10172116 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10173081 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10176820 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap] |
| rs10179458 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10181785 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10185897 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10189154 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10189526 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10208027 | 0.86[CHB][hapmap] |
| rs10865050 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11465736 | 1.00[JPT][hapmap] |
| rs11679893 | 0.83[ASN][1000 genomes] |
| rs11687768 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs11892768 | 0.86[CHB][hapmap] |
| rs12053526 | 0.86[CHB][hapmap];0.85[CHD][hapmap] |
| rs13030642 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13408569 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13408661 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13431828 | 1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1403552 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs17027029 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2075186 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs2160201 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2160203 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs2272127 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2293223 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs3213733 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs3732127 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3771158 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs3771161 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap] |
| rs3771164 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3771175 | 1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3771180 | 1.00[ASW][hapmap];0.82[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs56179005 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6543156 | 0.86[CHB][hapmap];0.85[CHD][hapmap] |
| rs72823619 | 0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72823621 | 0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72823628 | 0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72823632 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72823635 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72823641 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72823646 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72823669 | 0.84[ASN][1000 genomes] |
| rs7579846 | 0.86[CHB][hapmap] |
| rs950881 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18R1 | Distal transcriptional regulation |
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014