SNP Report
Basic Infomation
| Name | rs56179005 dbSNP |
|---|---|
| Location | chr:2,102974328 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10174323 | 0.84[ASN][1000 genomes] |
| rs10181785 | 0.84[ASN][1000 genomes] |
| rs10197862 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11679146 | 0.86[EUR][1000 genomes] |
| rs11687768 | 0.84[ASN][1000 genomes] |
| rs12712144 | 0.84[ASN][1000 genomes] |
| rs17027029 | 0.84[ASN][1000 genomes] |
| rs2160203 | 0.80[ASN][1000 genomes] |
| rs2272127 | 0.81[ASN][1000 genomes] |
| rs2293223 | 0.81[ASN][1000 genomes] |
| rs3213733 | 0.84[ASN][1000 genomes] |
| rs3732127 | 0.84[ASN][1000 genomes] |
| rs3771158 | 0.84[ASN][1000 genomes] |
| rs3771161 | 0.84[ASN][1000 genomes] |
| rs3771175 | 0.80[ASN][1000 genomes] |
| rs6543124 | 0.86[ASN][1000 genomes] |
| rs6730702 | 0.84[ASN][1000 genomes] |
| rs72823669 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823677 | 0.86[EUR][1000 genomes] |
| rs9807934 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18R1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014