SNP Report

Basic Infomation

Name	rs6543173 dbSNP
Location	chr:2,103250052
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10208027	1.00[EUR][1000 genomes]
rs11465736	0.82[CHB][hapmap]
rs11887071	1.00[EUR][1000 genomes]
rs11892768	1.00[EUR][1000 genomes]
rs12053191	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12053526	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs12619343	1.00[EUR][1000 genomes]
rs17027576	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs17027809	1.00[MEX][hapmap]
rs1861227	1.00[ASN][1000 genomes]
rs2110636	1.00[ASN][1000 genomes]
rs2160187	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28696001	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2871478	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806579	0.82[ASN][1000 genomes]
rs3806580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806581	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57150829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57682906	1.00[EUR][1000 genomes]
rs59038885	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59642933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59771371	1.00[EUR][1000 genomes]
rs60883579	1.00[EUR][1000 genomes]
rs61086489	1.00[EUR][1000 genomes]
rs61731285	1.00[EUR][1000 genomes]
rs6543156	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs6543168	1.00[ASN][1000 genomes]
rs6543169	1.00[ASN][1000 genomes]
rs6543172	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6650792	0.97[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6708609	0.93[JPT][hapmap]
rs6731245	0.98[ASN][1000 genomes]
rs6755047	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72997645	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72997648	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72997651	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73944370	1.00[EUR][1000 genomes]
rs73944371	1.00[EUR][1000 genomes]
rs7567717	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7573974	0.93[JPT][hapmap];0.80[ASN][1000 genomes]
rs7576791	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7579104	1.00[EUR][1000 genomes]
rs7579846	1.00[EUR][1000 genomes]
rs7582939	1.00[ASN][1000 genomes]
rs7583774	0.82[ASN][1000 genomes]
rs7591841	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7593439	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs7596181	1.00[EUR][1000 genomes]
rs7602695	1.00[ASN][1000 genomes]
rs7603628	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7603632	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9678846	0.93[JPT][hapmap];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC9A2	Distal transcriptional regulation
SLC9A2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)