SNP Report
Basic Infomation
| Name | rs7602695 dbSNP |
|---|---|
| Location | chr:2,103236789 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11894620 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12053191 | 0.97[ASN][1000 genomes] |
| rs17027576 | 0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1861227 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2110636 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2160187 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28696001 | 0.98[ASN][1000 genomes] |
| rs2871478 | 1.00[ASN][1000 genomes] |
| rs3806579 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3806580 | 1.00[ASN][1000 genomes] |
| rs3806581 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57150829 | 1.00[ASN][1000 genomes] |
| rs59038885 | 1.00[ASN][1000 genomes] |
| rs59642933 | 1.00[ASN][1000 genomes] |
| rs6543168 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6543169 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6543172 | 1.00[ASN][1000 genomes] |
| rs6543173 | 1.00[ASN][1000 genomes] |
| rs6650792 | 0.82[ASN][1000 genomes] |
| rs6708609 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6731245 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6755047 | 0.98[ASN][1000 genomes] |
| rs72828025 | 0.91[EUR][1000 genomes] |
| rs72997645 | 0.98[ASN][1000 genomes] |
| rs72997648 | 0.98[ASN][1000 genomes] |
| rs72997651 | 0.98[ASN][1000 genomes] |
| rs7567717 | 0.97[ASN][1000 genomes] |
| rs7573974 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7576791 | 0.97[ASN][1000 genomes] |
| rs7582939 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7583774 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7591841 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7593439 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7603628 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7603632 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7603856 | 0.97[EUR][1000 genomes] |
| rs9678846 | 0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RYBP | Distal transcriptional regulation |
| SLC9A4 | Distal transcriptional regulation |
| SLC9A2 | Distal transcriptional regulation |
| MFSD9 | Distal transcriptional regulation |
| TMEM182 | Distal transcriptional regulation |
| SLC9A2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014