SNP Report
Basic Infomation
| Name | rs6708609 dbSNP |
|---|---|
| Location | chr:2,103232093 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11894620 | 0.86[EUR][1000 genomes] |
| rs17027576 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1861227 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2110636 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2160187 | 1.00[CEU][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3806579 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3806581 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6543168 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6543169 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6543173 | 0.93[JPT][hapmap] |
| rs6650792 | 0.94[ASN][1000 genomes] |
| rs6731245 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72828025 | 0.80[EUR][1000 genomes] |
| rs7567717 | 0.93[JPT][hapmap] |
| rs7573974 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7576791 | 0.93[JPT][hapmap] |
| rs7582939 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7583774 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7591841 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7593439 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7602695 | 0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7603628 | 1.00[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs7603632 | 1.00[CEU][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs7603856 | 0.86[EUR][1000 genomes] |
| rs9678846 | 0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A2 | Proximal transcriptional regulation |
| SLC9A4 | Distal transcriptional regulation |
| SLC9A2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014