SNP Report

Basic Infomation

Name	rs6543146 dbSNP
Location	chr:2,103096695
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005043	0.81[GIH][hapmap];0.89[MEX][hapmap]
rs1014286	0.81[GIH][hapmap]
rs10172588	0.90[ASN][1000 genomes]
rs10175045	0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs10207579	0.84[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.85[ASN][1000 genomes]
rs1030026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11123934	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1403548	0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1403549	0.88[YRI][hapmap]
rs1523198	0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1523199	0.90[ASN][1000 genomes]
rs1523201	0.90[ASN][1000 genomes]
rs17027327	0.88[YRI][hapmap]
rs17027341	0.83[ASW][hapmap]
rs1829849	0.83[GIH][hapmap];0.84[MEX][hapmap]
rs1880000	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs2008157	0.81[GIH][hapmap];0.89[MEX][hapmap]
rs2008159	0.89[MEX][hapmap]
rs2015478	0.81[GIH][hapmap];0.89[MEX][hapmap]
rs2072508	0.91[ASN][1000 genomes]
rs2075187	0.90[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2075193	0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2140316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2310303	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2310304	0.88[ASN][1000 genomes]
rs4851015	0.87[ASN][1000 genomes]
rs4851594	0.87[ASN][1000 genomes]
rs4851596	0.85[ASN][1000 genomes]
rs4851602	0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4851604	0.85[GIH][hapmap]
rs6543150	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6543154	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs6543155	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs737231	0.84[ASN][1000 genomes]
rs741285	0.81[GIH][hapmap];0.89[MEX][hapmap]
rs7566063	0.90[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7575867	0.83[ASW][hapmap];0.88[YRI][hapmap]
rs7591872	0.90[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7591878	0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs7601773	0.83[ASW][hapmap];0.88[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
SLC9A4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)