SNP Report
Basic Infomation
| Name | rs4851596 dbSNP |
|---|---|
| Location | chr:2,103105744 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10203707 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10207579 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1030024 | 0.82[AFR][1000 genomes] |
| rs1030025 | 0.82[AFR][1000 genomes] |
| rs1030026 | 0.82[ASN][1000 genomes] |
| rs11692304 | 0.86[EUR][1000 genomes] |
| rs12712154 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1523200 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2072508 | 0.80[ASN][1000 genomes] |
| rs2140316 | 0.85[ASN][1000 genomes] |
| rs2310303 | 0.87[ASN][1000 genomes] |
| rs2871473 | 0.82[AFR][1000 genomes] |
| rs4851594 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4851604 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6543146 | 0.85[ASN][1000 genomes] |
| rs6719296 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs737231 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A4 | Distal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014