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rVarBase
SNP Report
Basic Infomation
Name
rs1030024  
dbSNP
Location
chr:2,103105769
Allele
A/T
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1030025
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027341
0.81[GIH][hapmap]
rs2871473
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4851596
0.82[AFR][1000 genomes]
rs6543147
1.00[CHB][hapmap]
rs7575867
0.81[GIH][hapmap]
rs7601773
0.81[GIH][hapmap]
rSNP related genes
Symbol
Regulation type
SLC9A4
Distal transcriptional regulation
SLC9A4
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
CD96
SCAN
EIF5B
SCAN