SNP Report
Basic Infomation
| Name | rs11692304 dbSNP |
|---|---|
| Location | chr:2,103095404 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10203707 | 0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10207579 | 0.96[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs12712154 | 0.90[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1523200 | 0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2241116 | 0.88[JPT][hapmap] |
| rs2293225 | 0.88[JPT][hapmap] |
| rs4851594 | 0.86[EUR][1000 genomes] |
| rs4851596 | 0.86[EUR][1000 genomes] |
| rs4851602 | 0.82[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs4851604 | 0.83[ASW][hapmap];0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6719296 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs737231 | 0.86[EUR][1000 genomes] |
| rs7605606 | 0.89[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A2 | Distal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CDK2AP1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014