SNP Report
Basic Infomation
| Name | rs4851615 dbSNP |
|---|---|
| Location | chr:2,103146999 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1005043 | 0.83[GIH][hapmap] |
| rs1014286 | 0.83[GIH][hapmap] |
| rs10179874 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10207579 | 0.81[GIH][hapmap];0.85[MEX][hapmap] |
| rs1357471 | 0.81[CEU][hapmap] |
| rs1476999 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1523204 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1829849 | 0.85[GIH][hapmap] |
| rs2008157 | 0.83[GIH][hapmap] |
| rs2008159 | 0.81[GIH][hapmap] |
| rs2015478 | 0.83[GIH][hapmap] |
| rs2058656 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2160202 | 0.81[JPT][hapmap] |
| rs2216000 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3771171 | 0.81[JPT][hapmap] |
| rs3771172 | 0.82[JPT][hapmap] |
| rs4851604 | 0.85[ASW][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap] |
| rs4851608 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4851612 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4851614 | 0.81[CEU][hapmap] |
| rs741285 | 0.83[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014