SNP Report

Basic Infomation

Name	rs2058656 dbSNP
Location	chr:2,103137026
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005043	0.81[CEU][hapmap]
rs1014286	0.81[CEU][hapmap]
rs10179874	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10195948	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs10210680	0.80[ASN][1000 genomes]
rs11676371	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs12712154	0.81[AFR][1000 genomes]
rs13019784	0.82[JPT][hapmap]
rs1476999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1829849	0.81[CEU][hapmap]
rs2008157	0.81[CEU][hapmap]
rs2008159	0.81[CEU][hapmap]
rs2015478	0.81[CEU][hapmap]
rs2160202	0.82[JPT][hapmap]
rs2216000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3771171	0.81[JPT][hapmap]
rs3771172	0.82[JPT][hapmap]
rs4851607	0.82[JPT][hapmap]
rs4851608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4851615	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6724109	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs6742381	0.80[ASN][1000 genomes]
rs6751949	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs741285	0.81[CEU][hapmap]
rs9989749	0.83[JPT][hapmap]
rs9989842	0.83[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SLC9A2	Distal transcriptional regulation
SLC9A4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)