SNP Report

Basic Infomation

Name	rs6742381 dbSNP
Location	chr:2,103125466
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10193407	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10195948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10210680	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1024798	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11123935	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11676371	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11685483	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12712155	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13019784	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1403550	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1403551	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1476999	0.80[ASN][1000 genomes]
rs1523203	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1523204	0.80[ASN][1000 genomes]
rs1916307	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2058656	0.80[ASN][1000 genomes]
rs2058657	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2192757	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2192758	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2216000	0.80[ASN][1000 genomes]
rs4851607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4851608	0.80[ASN][1000 genomes]
rs4851609	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4851611	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4851612	0.80[ASN][1000 genomes]
rs4851613	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6543158	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6543159	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6708949	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6714379	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6724109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724322	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6739301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6750851	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6750971	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6751949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7576376	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9989749	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989842	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC9A4	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)