SNP Report
Basic Infomation
| Name | rs6751949 dbSNP |
|---|---|
| Location | chr:2,103125138 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10193407 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10195948 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10210680 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1024798 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11123935 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11676371 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11685483 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12712155 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs13019784 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1403550 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1403551 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1476999 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1523203 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1523204 | 0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1916307 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2058656 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2058657 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2192757 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2192758 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2216000 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs4851607 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4851608 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs4851609 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4851611 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4851612 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs4851613 | 0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6543158 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6543159 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6708949 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6714379 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6724109 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6724322 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6739301 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6742381 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6750851 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6750971 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7576376 | 0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9989749 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9989842 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A2 | Distal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014