SNP Report
Basic Infomation
| Name | rs12712155 dbSNP |
|---|---|
| Location | chr:2,103127963 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 57)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1003431 | 0.82[ASN][1000 genomes] |
| rs1005042 | 0.82[ASN][1000 genomes] |
| rs1005043 | 0.82[ASN][1000 genomes] |
| rs1014286 | 0.82[ASN][1000 genomes] |
| rs10193407 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10195948 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10210680 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1024798 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11123935 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11676371 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11685483 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12712156 | 0.82[ASN][1000 genomes] |
| rs13019784 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1357471 | 0.82[ASN][1000 genomes] |
| rs1403550 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1403551 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1523203 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1829849 | 0.82[ASN][1000 genomes] |
| rs1916307 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2008157 | 0.82[ASN][1000 genomes] |
| rs2008159 | 0.82[ASN][1000 genomes] |
| rs2015478 | 0.82[ASN][1000 genomes] |
| rs2058657 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2160232 | 0.82[CHB][hapmap] |
| rs2192757 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2192758 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3849364 | 0.82[ASN][1000 genomes] |
| rs3849365 | 0.82[ASN][1000 genomes] |
| rs4241211 | 0.82[ASN][1000 genomes] |
| rs4241212 | 0.82[ASN][1000 genomes] |
| rs4851018 | 0.82[ASN][1000 genomes] |
| rs4851607 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs4851609 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851610 | 0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4851611 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851613 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851614 | 0.82[ASN][1000 genomes] |
| rs6543134 | 0.84[CHB][hapmap] |
| rs6543158 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6543159 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6708949 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6712638 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6712696 | 0.82[ASN][1000 genomes] |
| rs6714379 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6724109 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6724322 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6739236 | 0.82[ASN][1000 genomes] |
| rs6739301 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6742381 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs6750851 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6750971 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6751949 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs741285 | 0.82[ASN][1000 genomes] |
| rs7576376 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs759382 | 0.80[CHB][hapmap] |
| rs9989749 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9989842 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A4 | Distal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014