SNP Report

Basic Infomation

Name	rs6543158 dbSNP
Location	chr:2,103157352
Allele	C/G

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1003431	0.91[ASN][1000 genomes]
rs1005042	0.91[ASN][1000 genomes]
rs1005043	0.91[ASN][1000 genomes]
rs1014286	0.91[ASN][1000 genomes]
rs10193407	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10195948	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10210680	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1024798	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11123935	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11676371	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11685483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12712155	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12712156	0.91[ASN][1000 genomes]
rs13019784	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1357471	0.91[ASN][1000 genomes]
rs1403550	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1403551	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1523203	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1829849	0.91[ASN][1000 genomes]
rs1916307	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2008157	0.91[ASN][1000 genomes]
rs2008159	0.91[ASN][1000 genomes]
rs2015478	0.91[ASN][1000 genomes]
rs2058657	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192757	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2192758	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3849364	0.91[ASN][1000 genomes]
rs3849365	0.91[ASN][1000 genomes]
rs3849366	0.87[ASN][1000 genomes]
rs4241211	0.91[ASN][1000 genomes]
rs4241212	0.91[ASN][1000 genomes]
rs4851018	0.91[ASN][1000 genomes]
rs4851607	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4851609	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4851610	0.90[ASN][1000 genomes]
rs4851611	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4851613	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4851614	0.91[ASN][1000 genomes]
rs6543159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708949	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6712638	0.99[ASN][1000 genomes]
rs6712696	0.91[ASN][1000 genomes]
rs6714379	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6724109	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6724322	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6739236	0.91[ASN][1000 genomes]
rs6739301	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6742381	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6750851	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6750971	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6751949	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs741285	0.91[ASN][1000 genomes]
rs7576376	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9989749	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9989842	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC9A2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)