SNP Report
Basic Infomation
| Name | rs1476999 dbSNP |
|---|---|
| Location | chr:2,103131679 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10179874 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10195948 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10210680 | 0.80[ASN][1000 genomes] |
| rs11676371 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs12712154 | 0.81[AFR][1000 genomes] |
| rs13019784 | 0.83[JPT][hapmap] |
| rs1523204 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2058656 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2216000 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851607 | 0.82[JPT][hapmap] |
| rs4851608 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851612 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4851615 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6724109 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs6742381 | 0.80[ASN][1000 genomes] |
| rs6751949 | 0.83[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs9989749 | 0.83[JPT][hapmap] |
| rs9989842 | 0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC9A4 | Distal transcriptional regulation |
| SLC9A2 | Distal transcriptional regulation |
| SLC9A4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014