SNP Report
Basic Infomation
| Name | rs4988955 dbSNP |
|---|---|
| Location | chr:2,102967928 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 85)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10170583 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10173193 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10176664 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10192036 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10192157 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10203558 | 0.84[JPT][hapmap] |
| rs10204137 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10204837 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10206291 | 0.85[JPT][hapmap] |
| rs10206753 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10208196 | 0.85[JPT][hapmap] |
| rs10208293 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs10439410 | 0.85[JPT][hapmap] |
| rs11123925 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11688559 | 0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11688568 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11688573 | 0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11689730 | 0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11695627 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13021177 | 0.85[JPT][hapmap] |
| rs13392100 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs13424006 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1362348 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1420097 | 0.85[JPT][hapmap] |
| rs1420099 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1420100 | 0.85[JPT][hapmap] |
| rs1420105 | 0.85[JPT][hapmap] |
| rs1592458 | 0.85[JPT][hapmap] |
| rs1861245 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs1974675 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2041739 | 0.85[JPT][hapmap] |
| rs2058659 | 0.85[JPT][hapmap] |
| rs2160201 | 0.82[JPT][hapmap] |
| rs2287033 | 0.85[JPT][hapmap] |
| rs2287037 | 0.87[ASW][hapmap];0.85[LWK][hapmap] |
| rs2293224 | 0.85[JPT][hapmap] |
| rs2310300 | 0.85[JPT][hapmap] |
| rs3213732 | 0.85[JPT][hapmap] |
| rs3755265 | 0.85[JPT][hapmap] |
| rs3755266 | 0.85[JPT][hapmap] |
| rs3755276 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3771154 | 0.85[JPT][hapmap] |
| rs3771155 | 0.85[JPT][hapmap] |
| rs3771166 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4311080 | 0.83[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4479442 | 0.83[JPT][hapmap] |
| rs4485584 | 0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4485585 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4488681 | 0.81[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4851004 | 0.85[JPT][hapmap] |
| rs4851565 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4851566 | 0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4988956 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4988957 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4988958 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5010059 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6543123 | 0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6543124 | 0.84[EUR][1000 genomes] |
| rs6704565 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6706002 | 0.85[JPT][hapmap] |
| rs67088699 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6710034 | 0.85[JPT][hapmap] |
| rs6710885 | 0.87[ASW][hapmap];0.82[LWK][hapmap];0.83[YRI][hapmap] |
| rs6734742 | 0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6743516 | 0.85[JPT][hapmap] |
| rs6749014 | 0.85[JPT][hapmap] |
| rs6749114 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6751967 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6751977 | 0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6752482 | 0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6758936 | 0.85[JPT][hapmap] |
| rs6759479 | 0.85[JPT][hapmap] |
| rs6760621 | 0.84[JPT][hapmap] |
| rs72823661 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72823663 | 0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7558339 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7559845 | 0.85[JPT][hapmap] |
| rs7589142 | 1.00[JPT][hapmap] |
| rs7603730 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7608638 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs885088 | 0.85[JPT][hapmap] |
| rs9308857 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9807962 | 0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9807989 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9808453 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL18R1 | Proximal transcriptional regulation |
| IL1RL1 | RNA binding protein mediated regulation |
| IL18R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014