SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10490204	0.82[CHD][hapmap]
rs11123923	0.83[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs1135354	0.82[CHD][hapmap]
rs12479210	0.83[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs12712142	0.83[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12998521	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs13001325	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs13001714	0.86[ASN][1000 genomes]
rs13017455	0.83[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs13019081	0.83[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1420101	0.82[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs1420104	0.83[ASN][1000 genomes]
rs17027166	0.82[CHD][hapmap]
rs1861246	0.83[CHB][hapmap]
rs2287035	0.82[CHD][hapmap]
rs2287037	0.88[CHD][hapmap]
rs3732126	0.82[CHD][hapmap]
rs3771150	0.82[CHD][hapmap]
rs4851005	0.82[CHD][hapmap]
rs4851011	0.82[CHD][hapmap]
rs6543119	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs6710885	0.83[CHB][hapmap];0.86[CHD][hapmap]
rs950880	0.83[CHB][hapmap];0.87[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
IL18R1	Distal transcriptional regulation
IL1RL1	RNA binding protein mediated regulation
IL18R1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)