SNP Report
Name | rs11642116   dbSNP |
---|---|
Location | chr:16,23797412 |
Allele | A/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11074578 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[ASN][1000 genomes] |
rs11639754 | 0.85[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs12708652 | 0.83[CHB][hapmap] |
rs152041 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs152042 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs168969 | 0.86[ASN][1000 genomes] |
rs16972959 | 0.82[ASW][hapmap] |
rs174217 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs174219 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs17807642 | 1.00[YRI][hapmap] |
rs1858873 | 0.84[ASN][1000 genomes] |
rs192188 | 1.00[YRI][hapmap] |
rs194791 | 0.83[ASN][1000 genomes] |
rs194792 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs194793 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
rs194797 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs194811 | 0.82[JPT][hapmap] |
rs194812 | 0.94[CEU][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
rs194813 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2520009 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2520016 | 0.88[JPT][hapmap] |
rs2520017 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2520019 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2575384 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs4018633 | 0.86[ASN][1000 genomes] |
rs4592664 | 0.82[ASW][hapmap] |
rs7196602 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9927848 | 0.83[CHB][hapmap] |
Symbol | Regulation type |
---|---|
PRKCB | Distal transcriptional regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ACSM5 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014