SNP Report

Basic Infomation

Name	rs11642116 dbSNP
Location	chr:16,23797412
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11074578	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[ASN][1000 genomes]
rs11639754	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12708652	0.83[CHB][hapmap]
rs152041	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs152042	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs168969	0.86[ASN][1000 genomes]
rs16972959	0.82[ASW][hapmap]
rs174217	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs174219	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17807642	1.00[YRI][hapmap]
rs1858873	0.84[ASN][1000 genomes]
rs192188	1.00[YRI][hapmap]
rs194791	0.83[ASN][1000 genomes]
rs194792	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs194793	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs194797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs194811	0.82[JPT][hapmap]
rs194812	0.94[CEU][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs194813	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2520009	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2520016	0.88[JPT][hapmap]
rs2520017	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2520019	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2575384	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4018633	0.86[ASN][1000 genomes]
rs4592664	0.82[ASW][hapmap]
rs7196602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927848	0.83[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
PRKCB	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)