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rVarBase
SNP Report
Basic Infomation
Name
rs17807642  
dbSNP
Location
chr:16,23725721
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11642116
1.00[YRI][hapmap]
rs192188
1.00[YRI][hapmap]
rs34014370
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34465489
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ERN2
Proximal transcriptional regulation
PLK1
Distal transcriptional regulation
ENSG00000261583
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
KIAA1737
SCAN
C16orf52
SCAN
SLC5A11
SCAN
UMOD
SCAN