SNP Report
Basic Infomation
| Name | rs194793 dbSNP |
|---|---|
| Location | chr:16,23822053 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074578 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11639754 | 0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11642116 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs12708652 | 0.81[CEU][hapmap];0.83[CHB][hapmap] |
| rs152041 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs152042 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs168969 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs174217 | 0.83[ASN][1000 genomes] |
| rs174219 | 0.87[ASN][1000 genomes] |
| rs194791 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs194792 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs194795 | 0.87[EUR][1000 genomes] |
| rs194797 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs194812 | 0.81[CEU][hapmap];0.81[JPT][hapmap] |
| rs194813 | 0.87[ASN][1000 genomes] |
| rs2520009 | 0.83[ASN][1000 genomes] |
| rs2520016 | 0.81[JPT][hapmap] |
| rs2520017 | 0.85[ASN][1000 genomes] |
| rs2520019 | 0.85[ASN][1000 genomes] |
| rs2575382 | 0.96[EUR][1000 genomes] |
| rs2575384 | 0.93[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs3891380 | 0.94[EUR][1000 genomes] |
| rs4018633 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs59043745 | 0.95[EUR][1000 genomes] |
| rs7196602 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs9927848 | 0.81[CEU][hapmap];0.83[CHB][hapmap] |
| rs9933339 | 0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014