SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11074578	0.81[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap]
rs11642116	0.94[CEU][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs152041	0.87[CEU][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes]
rs152042	0.87[CEU][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs174217	0.92[EUR][1000 genomes]
rs174219	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1858874	0.84[AFR][1000 genomes]
rs194792	0.81[CEU][hapmap];0.92[GIH][hapmap];0.87[JPT][hapmap]
rs194793	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs194797	0.94[CEU][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes]
rs194813	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2520009	0.92[EUR][1000 genomes]
rs2520016	0.82[ASW][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs2520017	0.98[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2520018	0.86[AFR][1000 genomes]
rs2520019	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs2575384	0.81[JPT][hapmap]
rs7196602	0.94[CEU][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9923292	0.86[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 3)