SNP Report
Name | rs194812   dbSNP |
---|---|
Location | chr:16,23803261 |
Allele | T/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11074578 | 0.81[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap] |
rs11642116 | 0.94[CEU][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes] |
rs152041 | 0.87[CEU][hapmap];0.87[JPT][hapmap];0.84[EUR][1000 genomes] |
rs152042 | 0.87[CEU][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes] |
rs174217 | 0.92[EUR][1000 genomes] |
rs174219 | 0.97[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs1858874 | 0.84[AFR][1000 genomes] |
rs194792 | 0.81[CEU][hapmap];0.92[GIH][hapmap];0.87[JPT][hapmap] |
rs194793 | 0.81[CEU][hapmap];0.81[JPT][hapmap] |
rs194797 | 0.94[CEU][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes] |
rs194813 | 0.99[AFR][1000 genomes];0.99[EUR][1000 genomes] |
rs2520009 | 0.92[EUR][1000 genomes] |
rs2520016 | 0.82[ASW][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes] |
rs2520017 | 0.98[AFR][1000 genomes];0.97[EUR][1000 genomes] |
rs2520018 | 0.86[AFR][1000 genomes] |
rs2520019 | 0.98[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs2575384 | 0.81[JPT][hapmap] |
rs7196602 | 0.94[CEU][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.98[EUR][1000 genomes] |
rs9923292 | 0.86[AFR][1000 genomes] |
Symbol | Regulation type |
---|---|
PRKCB | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014