SNP Report

Basic Infomation

Name	rs11074578 dbSNP
Location	chr:16,23815150
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11639754	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11642116	1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[ASN][1000 genomes]
rs12708652	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs152041	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs152042	1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[YRI][hapmap]
rs168969	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs174217	0.84[ASN][1000 genomes]
rs174219	0.88[ASN][1000 genomes]
rs194791	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194792	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194793	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194795	0.83[EUR][1000 genomes]
rs194797	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes]
rs194811	0.82[JPT][hapmap]
rs194812	0.81[CEU][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap]
rs194813	0.88[ASN][1000 genomes]
rs2106375	0.85[TSI][hapmap]
rs2520009	0.84[ASN][1000 genomes]
rs2520016	0.88[JPT][hapmap]
rs2520017	0.86[ASN][1000 genomes]
rs2520019	0.86[ASN][1000 genomes]
rs2575382	0.93[EUR][1000 genomes]
rs2575384	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs3891380	0.90[EUR][1000 genomes]
rs4018633	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59043745	0.92[EUR][1000 genomes]
rs7196602	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9927848	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs9933339	0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)