SNP Report
Name | rs168969   dbSNP |
---|---|
Location | chr:16,23820750 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11074578 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11639754 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11642116 | 0.86[ASN][1000 genomes] |
rs174217 | 0.84[ASN][1000 genomes] |
rs174219 | 0.88[ASN][1000 genomes] |
rs194791 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs194792 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs194793 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs194795 | 0.87[EUR][1000 genomes] |
rs194797 | 0.84[ASN][1000 genomes] |
rs194813 | 0.88[ASN][1000 genomes] |
rs2520009 | 0.84[ASN][1000 genomes] |
rs2520017 | 0.86[ASN][1000 genomes] |
rs2520019 | 0.86[ASN][1000 genomes] |
rs2575382 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs2575384 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs3891380 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs4018633 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs59043745 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7196602 | 0.86[ASN][1000 genomes] |
rs9933339 | 0.92[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
PRKCB | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014