SNP Report
Basic Infomation
| Name | rs3891380 dbSNP |
|---|---|
| Location | chr:16,23834759 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10852255 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11074578 | 0.90[EUR][1000 genomes] |
| rs11639754 | 0.88[EUR][1000 genomes] |
| rs12708652 | 0.96[ASN][1000 genomes] |
| rs168969 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs194791 | 0.95[EUR][1000 genomes] |
| rs194792 | 0.92[EUR][1000 genomes] |
| rs194793 | 0.94[EUR][1000 genomes] |
| rs194795 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2575382 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2575384 | 0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs34224029 | 0.96[ASN][1000 genomes] |
| rs4018633 | 0.92[EUR][1000 genomes] |
| rs4081534 | 0.99[ASN][1000 genomes] |
| rs59043745 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7185480 | 0.99[ASN][1000 genomes] |
| rs9927848 | 0.96[ASN][1000 genomes] |
| rs9927993 | 0.96[ASN][1000 genomes] |
| rs9933339 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014