SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11074578	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs11642116	0.83[CHB][hapmap]
rs152041	0.82[CHB][hapmap]
rs152042	0.83[CHB][hapmap]
rs194792	0.81[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap]
rs194793	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs194797	0.83[CHB][hapmap]
rs2023671	0.82[EUR][1000 genomes]
rs2188357	0.82[EUR][1000 genomes]
rs2188358	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs2575382	0.97[ASN][1000 genomes]
rs2575384	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs34224029	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3891380	0.96[ASN][1000 genomes]
rs4081534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59043745	0.96[ASN][1000 genomes]
rs6497687	0.82[EUR][1000 genomes]
rs6497688	0.82[EUR][1000 genomes]
rs7184668	0.82[EUR][1000 genomes]
rs7184949	0.82[EUR][1000 genomes]
rs7185142	0.81[EUR][1000 genomes]
rs7185480	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7185969	0.82[EUR][1000 genomes]
rs7189218	0.81[EUR][1000 genomes]
rs7196602	0.82[CHB][hapmap]
rs9927848	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9927993	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9933339	0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 5)