SNP Report

Basic Infomation

Name	rs2575384 dbSNP
Location	chr:16,23837694
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10852255	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11074578	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs11074582	0.80[AMR][1000 genomes]
rs11639754	0.91[EUR][1000 genomes]
rs11642116	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11645239	0.80[EUR][1000 genomes]
rs12443784	1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs12447916	0.80[AMR][1000 genomes]
rs12708652	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs152041	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs152042	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs168969	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs194791	0.97[EUR][1000 genomes]
rs194792	0.92[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs194793	0.93[CEU][hapmap];0.96[EUR][1000 genomes]
rs194795	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs194797	0.82[JPT][hapmap]
rs194812	0.81[JPT][hapmap]
rs2106376	0.80[AMR][1000 genomes]
rs2575382	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34224029	0.96[ASN][1000 genomes]
rs3891380	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4018633	0.94[EUR][1000 genomes]
rs4081534	1.00[ASN][1000 genomes]
rs59043745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185480	1.00[ASN][1000 genomes]
rs7196602	0.82[JPT][hapmap]
rs916678	0.82[EUR][1000 genomes]
rs9927848	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs9927993	0.96[ASN][1000 genomes]
rs9933339	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)