SNP Report
Basic Infomation
| Name | rs11645239 dbSNP |
|---|---|
| Location | chr:16,23847062 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10852255 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11074582 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11644103 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12443784 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs12447916 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs194795 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2023671 | 0.97[ASN][1000 genomes] |
| rs2106375 | 0.85[EUR][1000 genomes] |
| rs2106376 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2188357 | 0.97[ASN][1000 genomes] |
| rs2188358 | 0.97[ASN][1000 genomes] |
| rs2575382 | 0.80[EUR][1000 genomes] |
| rs2575384 | 0.80[EUR][1000 genomes] |
| rs56061125 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6497687 | 0.95[ASN][1000 genomes] |
| rs6497688 | 0.95[ASN][1000 genomes] |
| rs7184668 | 0.98[ASN][1000 genomes] |
| rs7184949 | 0.98[ASN][1000 genomes] |
| rs7185142 | 0.95[ASN][1000 genomes] |
| rs7185969 | 0.98[ASN][1000 genomes] |
| rs7189218 | 0.94[ASN][1000 genomes] |
| rs7190426 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7200394 | 0.94[ASN][1000 genomes] |
| rs73537014 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7404078 | 0.90[ASN][1000 genomes] |
| rs916678 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014