SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11074578	1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.90[YRI][hapmap]
rs11642116	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12708652	0.83[CHB][hapmap]
rs152041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs174217	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs174219	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs194792	1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs194793	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs194797	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs194811	0.82[JPT][hapmap]
rs194812	0.87[CEU][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs194813	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2520009	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2520016	0.88[JPT][hapmap]
rs2520017	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2520019	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2575384	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7196602	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9927848	0.83[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
CHP2	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)