SNP Report
Basic Infomation
| Name | rs2520009 dbSNP |
|---|---|
| Location | chr:16,23780413 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074578 | 0.84[ASN][1000 genomes] |
| rs11639754 | 0.86[ASN][1000 genomes] |
| rs11642116 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs152041 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs152042 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs168969 | 0.84[ASN][1000 genomes] |
| rs174217 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs174219 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1858873 | 0.82[ASN][1000 genomes] |
| rs194791 | 0.82[ASN][1000 genomes] |
| rs194792 | 0.84[ASN][1000 genomes] |
| rs194793 | 0.83[ASN][1000 genomes] |
| rs194797 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs194812 | 0.92[EUR][1000 genomes] |
| rs194813 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2520017 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2520019 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4018633 | 0.84[ASN][1000 genomes] |
| rs7196602 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CHP2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014