SNP Report
Name | rs194797   dbSNP |
---|---|
Location | chr:16,23780839 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11074578 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[ASN][1000 genomes] |
rs11639754 | 0.86[ASN][1000 genomes] |
rs11642116 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12708652 | 0.83[CHB][hapmap] |
rs152041 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs152042 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs168969 | 0.84[ASN][1000 genomes] |
rs174217 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs174219 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1858873 | 0.82[ASN][1000 genomes] |
rs194791 | 0.82[ASN][1000 genomes] |
rs194792 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rs194793 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes] |
rs194811 | 0.82[JPT][hapmap] |
rs194812 | 0.94[CEU][hapmap];0.87[JPT][hapmap];0.92[EUR][1000 genomes] |
rs194813 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2520009 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2520016 | 0.88[JPT][hapmap] |
rs2520017 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2520019 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2575384 | 0.82[JPT][hapmap] |
rs4018633 | 0.84[ASN][1000 genomes] |
rs7196602 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9927848 | 0.83[CHB][hapmap] |
Symbol | Regulation type |
---|---|
CHP2 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014