SNP Report
Basic Infomation
| Name | rs2520016 dbSNP |
|---|---|
| Location | chr:16,23795923 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074578 | 0.88[JPT][hapmap] |
| rs11642116 | 0.88[JPT][hapmap] |
| rs152041 | 0.88[JPT][hapmap] |
| rs152042 | 0.88[JPT][hapmap] |
| rs168968 | 0.90[CHB][hapmap];0.82[JPT][hapmap] |
| rs168973 | 0.84[ASN][1000 genomes] |
| rs174219 | 0.83[AFR][1000 genomes] |
| rs1858874 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs194792 | 0.88[JPT][hapmap] |
| rs194793 | 0.81[JPT][hapmap] |
| rs194797 | 0.88[JPT][hapmap] |
| rs194811 | 0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs194812 | 0.82[ASW][hapmap];0.85[LWK][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs194813 | 0.85[AFR][1000 genomes] |
| rs2520017 | 0.86[AFR][1000 genomes] |
| rs2520018 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2520019 | 0.86[AFR][1000 genomes] |
| rs7196602 | 0.88[JPT][hapmap];0.82[YRI][hapmap] |
| rs9923292 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014