SNP Report
Basic Infomation
| Name | rs194811 dbSNP |
|---|---|
| Location | chr:16,23803884 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11074578 | 0.82[JPT][hapmap] |
| rs11642116 | 0.82[JPT][hapmap] |
| rs12446910 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs152041 | 0.82[JPT][hapmap] |
| rs152042 | 0.82[JPT][hapmap] |
| rs168968 | 0.95[CHB][hapmap];0.88[JPT][hapmap] |
| rs168973 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1858874 | 0.82[ASN][1000 genomes] |
| rs194792 | 0.82[JPT][hapmap] |
| rs194797 | 0.82[JPT][hapmap] |
| rs194805 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2520016 | 0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2520018 | 0.82[ASN][1000 genomes] |
| rs7196602 | 0.82[JPT][hapmap] |
| rs9923292 | 0.82[ASN][1000 genomes] |
| rs9929466 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014