SNP Report
Basic Infomation
| Name | rs11568820 dbSNP |
|---|---|
| Location | chr:12,48302545 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 41)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747525 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10783219 | 0.83[JPT][hapmap] |
| rs10783221 | 0.87[CEU][hapmap];0.81[MEX][hapmap];0.82[EUR][1000 genomes] |
| rs10875695 | 0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs10875697 | 0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10875700 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.86[JPT][hapmap];0.80[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10875701 | 0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10875702 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10875704 | 0.87[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs10875706 | 0.82[EUR][1000 genomes] |
| rs10875707 | 0.82[EUR][1000 genomes] |
| rs10875708 | 0.87[CEU][hapmap];0.81[CHD][hapmap];0.82[EUR][1000 genomes] |
| rs10875709 | 0.82[EUR][1000 genomes] |
| rs11168311 | 0.85[EUR][1000 genomes] |
| rs11168314 | 0.87[CEU][hapmap];0.81[CHD][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs11168315 | 0.87[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11168316 | 0.87[CEU][hapmap];0.81[CHD][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs11168318 | 0.87[CEU][hapmap];0.81[CHD][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs11168320 | 0.82[EUR][1000 genomes] |
| rs11829292 | 0.98[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4237855 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4254129 | 0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4334089 | 0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4402365 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4411326 | 0.87[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs4442605 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4454781 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4760655 | 0.81[JPT][hapmap] |
| rs61920870 | 0.86[EUR][1000 genomes] |
| rs7132324 | 0.83[JPT][hapmap] |
| rs7136534 | 0.95[CHB][hapmap];0.86[JPT][hapmap] |
| rs7299460 | 0.83[JPT][hapmap] |
| rs7302235 | 0.89[ASN][1000 genomes] |
| rs7303966 | 1.00[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7305180 | 0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7308216 | 0.90[EUR][1000 genomes] |
| rs7312286 | 0.86[JPT][hapmap] |
| rs7965397 | 0.92[ASN][1000 genomes] |
| rs7970314 | 0.82[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7975675 | 0.81[EUR][1000 genomes] |
| rs7976091 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Proximal transcriptional regulation |
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014