SNP Report
Basic Infomation
| Name | rs7970314 dbSNP |
|---|---|
| Location | chr:12,48308174 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083198 | 0.90[ASN][1000 genomes] |
| rs10747525 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10747527 | 0.85[CHB][hapmap];0.82[CHD][hapmap] |
| rs10783219 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10783221 | 0.85[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap] |
| rs10875697 | 0.89[EUR][1000 genomes] |
| rs10875699 | 0.95[ASN][1000 genomes] |
| rs10875700 | 0.88[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs10875701 | 0.90[EUR][1000 genomes] |
| rs10875702 | 0.90[EUR][1000 genomes] |
| rs11568820 | 0.82[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11829292 | 0.90[EUR][1000 genomes] |
| rs12304110 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4254129 | 0.90[EUR][1000 genomes] |
| rs4402365 | 0.90[EUR][1000 genomes] |
| rs4442605 | 0.90[EUR][1000 genomes] |
| rs4454781 | 0.90[EUR][1000 genomes] |
| rs4516035 | 1.00[YRI][hapmap] |
| rs4578458 | 0.95[ASN][1000 genomes] |
| rs4578459 | 0.83[ASN][1000 genomes] |
| rs4760603 | 0.92[ASN][1000 genomes] |
| rs4760655 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4760669 | 0.94[ASN][1000 genomes] |
| rs4760671 | 1.00[YRI][hapmap] |
| rs6580644 | 0.96[ASN][1000 genomes] |
| rs6580645 | 0.83[ASN][1000 genomes] |
| rs7132324 | 0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7139166 | 1.00[YRI][hapmap] |
| rs7299460 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7303966 | 0.82[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs7305180 | 0.80[EUR][1000 genomes] |
| rs7308216 | 0.82[EUR][1000 genomes] |
| rs7310552 | 1.00[YRI][hapmap] |
| rs7311856 | 1.00[YRI][hapmap] |
| rs7312286 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs7976091 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014