SNP Report

Basic Infomation

Name	rs7305180 dbSNP
Location	chr:12,48314935
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10747525	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10875695	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10875697	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10875700	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10875701	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875702	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875704	0.92[CHD][hapmap]
rs10875705	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10875708	0.84[CHD][hapmap]
rs11168309	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11168311	0.80[EUR][1000 genomes]
rs11168313	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11168314	0.84[CHD][hapmap]
rs11168316	0.84[CHD][hapmap]
rs11168318	0.84[CHD][hapmap]
rs11568820	0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11829292	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12304114	0.93[ASN][1000 genomes]
rs12306963	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12831006	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34381446	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4237855	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs4254129	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4334089	0.81[JPT][hapmap]
rs4402365	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4442605	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4454781	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61920869	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7136534	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.80[MKK][hapmap];0.82[YRI][hapmap];0.96[ASN][1000 genomes]
rs7302235	0.83[ASN][1000 genomes]
rs7303966	0.84[CHD][hapmap];0.82[EUR][1000 genomes]
rs7308216	0.85[ASN][1000 genomes]
rs7970314	0.80[EUR][1000 genomes]
rs7976091	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
AQP6	SCAN
RAPGEF3	SCAN