SNP Report
Basic Infomation
| Name | rs61920869 dbSNP |
|---|---|
| Location | chr:12,48327071 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783221 | 0.85[EUR][1000 genomes] |
| rs10875704 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10875705 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10875706 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10875707 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10875708 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10875709 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11168309 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11168311 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11168313 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11168314 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11168315 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11168316 | 0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11168318 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11168319 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11168320 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12306963 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12831006 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs34381446 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4411326 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs61920870 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7303966 | 0.82[EUR][1000 genomes] |
| rs7305180 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7308216 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7975675 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014