SNP Report

Basic Infomation

Name	rs10875708 dbSNP
Location	chr:12,48333750
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10783221	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs10875697	0.83[EUR][1000 genomes]
rs10875700	0.87[CEU][hapmap];0.82[CHD][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs10875701	0.84[EUR][1000 genomes]
rs10875702	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs10875704	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.80[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875705	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10875706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875709	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168309	0.84[EUR][1000 genomes]
rs11168311	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11168313	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168315	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568820	0.87[CEU][hapmap];0.81[CHD][hapmap];0.82[EUR][1000 genomes]
rs11829292	0.84[EUR][1000 genomes]
rs12306963	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12831006	0.81[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34381446	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4254129	0.84[EUR][1000 genomes]
rs4334089	0.82[CHB][hapmap]
rs4402365	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4411326	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4442605	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs4454781	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs61920869	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61920870	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7303966	0.87[CEU][hapmap];0.90[CHD][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs7305180	0.84[CHD][hapmap]
rs7308216	0.90[EUR][1000 genomes]
rs7975675	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7976091	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
HDAC7	Distal transcriptional regulation
VDR	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)