SNP Report

Basic Infomation

Name	rs10875709 dbSNP
Location	chr:12,48333855
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10783221	0.94[EUR][1000 genomes]
rs10875697	0.83[EUR][1000 genomes]
rs10875700	0.84[EUR][1000 genomes]
rs10875701	0.84[EUR][1000 genomes]
rs10875702	0.84[EUR][1000 genomes]
rs10875704	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10875705	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10875706	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875707	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875708	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168309	0.84[EUR][1000 genomes]
rs11168311	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11168313	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11168314	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168315	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168316	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168318	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168319	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168320	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568820	0.82[EUR][1000 genomes]
rs11829292	0.84[EUR][1000 genomes]
rs12306963	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12831006	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34381446	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4254129	0.84[EUR][1000 genomes]
rs4402365	0.84[EUR][1000 genomes]
rs4411326	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4442605	0.84[EUR][1000 genomes]
rs4454781	0.84[EUR][1000 genomes]
rs61920869	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61920870	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7303966	0.89[EUR][1000 genomes]
rs7308216	0.90[EUR][1000 genomes]
rs7975675	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7976091	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
HDAC7	Distal transcriptional regulation
VDR	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)