SNP Report

Basic Infomation

Name	rs12831006 dbSNP
Location	chr:12,48328454
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10747527	0.82[JPT][hapmap]
rs10783221	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs10875704	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10875705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10875706	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10875707	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10875708	0.81[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10875709	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168309	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11168311	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168313	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11168314	0.80[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168315	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168316	0.81[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11168318	0.81[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168319	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11168320	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12306963	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34381446	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4411326	0.81[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61920869	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61920870	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7303966	0.83[EUR][1000 genomes]
rs7305180	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7308216	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7975675	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)