SNP Report
Basic Infomation
| Name | rs10747527 dbSNP |
|---|---|
| Location | chr:12,48332724 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783219 | 0.95[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs10783221 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10875699 | 0.87[AMR][1000 genomes] |
| rs10875704 | 0.86[JPT][hapmap] |
| rs10875705 | 0.86[JPT][hapmap] |
| rs11168315 | 0.85[JPT][hapmap] |
| rs12831006 | 0.82[JPT][hapmap] |
| rs4237855 | 0.87[MEX][hapmap] |
| rs4411326 | 0.83[JPT][hapmap] |
| rs4578458 | 0.88[AMR][1000 genomes] |
| rs4578459 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4760603 | 0.87[AMR][1000 genomes] |
| rs4760655 | 0.95[CHB][hapmap];0.85[AMR][1000 genomes] |
| rs4760669 | 0.86[AMR][1000 genomes] |
| rs6580644 | 0.85[AMR][1000 genomes] |
| rs6580645 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7132324 | 0.95[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes] |
| rs7299460 | 0.85[CHB][hapmap] |
| rs7312286 | 0.95[CHB][hapmap];0.87[AMR][1000 genomes] |
| rs7970314 | 0.85[CHB][hapmap];0.82[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HDAC7 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014