SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10083198	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10747527	0.85[CHB][hapmap]
rs10783219	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10783221	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs10875699	0.93[ASN][1000 genomes]
rs11168292	0.91[YRI][hapmap]
rs11168293	0.91[YRI][hapmap]
rs11568820	0.83[JPT][hapmap]
rs12304110	0.90[ASN][1000 genomes]
rs4578458	0.92[ASN][1000 genomes]
rs4578459	0.81[ASN][1000 genomes]
rs4760603	0.93[ASN][1000 genomes]
rs4760655	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4760658	0.91[YRI][hapmap]
rs4760669	0.92[ASN][1000 genomes]
rs6580644	0.92[ASN][1000 genomes]
rs6580645	0.81[ASN][1000 genomes]
rs7132324	0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7136534	0.82[EUR][1000 genomes]
rs7312286	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7970314	1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000205537	Distal transcriptional regulation
VDR	Distal transcriptional regulation
VDR	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)