SNP Report
Basic Infomation
| Name | rs4760658 dbSNP |
|---|---|
| Location | chr:12,48296486 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875696 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs11168292 | 0.91[ASW][hapmap];0.92[CEU][hapmap];0.96[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11168293 | 0.91[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11168297 | 0.86[ASN][1000 genomes] |
| rs11614332 | 0.86[ASN][1000 genomes] |
| rs3890733 | 0.82[ASW][hapmap];0.92[CEU][hapmap];0.91[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs3890734 | 0.92[CEU][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4516035 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes] |
| rs7139166 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs7299460 | 0.91[YRI][hapmap] |
| rs7310552 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAPGEF3 | Distal transcriptional regulation |
| ENSG00000205537 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| TMEM106C | Distal transcriptional regulation |
| VDR | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| PRKAG1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014