SNP Report
Basic Infomation
| Name | rs6580645 dbSNP |
|---|---|
| Location | chr:12,48321023 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747527 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10783219 | 0.85[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10783221 | 0.80[ASN][1000 genomes] |
| rs10875699 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4578458 | 0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4578459 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760603 | 0.87[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4760655 | 0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4760669 | 0.86[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6580644 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7132324 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7299460 | 0.81[ASN][1000 genomes] |
| rs7312286 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7970314 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014