SNP Report

Basic Infomation

Name	rs10783221 dbSNP
Location	chr:12,48334639
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10747527	0.91[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs10783219	0.86[CHB][hapmap]
rs10875697	0.81[EUR][1000 genomes]
rs10875700	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10875701	0.82[EUR][1000 genomes]
rs10875702	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs10875704	1.00[CEU][hapmap];0.82[TSI][hapmap];0.91[EUR][1000 genomes]
rs10875705	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs10875706	0.94[EUR][1000 genomes]
rs10875707	0.94[EUR][1000 genomes]
rs10875708	1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes]
rs10875709	0.94[EUR][1000 genomes]
rs11168309	0.84[EUR][1000 genomes]
rs11168311	0.94[EUR][1000 genomes]
rs11168313	0.84[EUR][1000 genomes]
rs11168314	1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs11168315	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11168316	1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs11168318	1.00[CEU][hapmap];0.91[JPT][hapmap];0.85[TSI][hapmap];0.93[EUR][1000 genomes]
rs11168319	0.91[EUR][1000 genomes]
rs11168320	0.94[EUR][1000 genomes]
rs11568820	0.87[CEU][hapmap];0.81[MEX][hapmap];0.82[EUR][1000 genomes]
rs11829292	0.82[EUR][1000 genomes]
rs12306963	0.86[EUR][1000 genomes]
rs12831006	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs34381446	0.84[EUR][1000 genomes]
rs4254129	0.82[EUR][1000 genomes]
rs4402365	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs4411326	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4442605	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs4454781	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs4578459	0.80[ASN][1000 genomes]
rs4760655	0.85[CHB][hapmap]
rs61920869	0.85[EUR][1000 genomes]
rs61920870	0.89[EUR][1000 genomes]
rs6580645	0.80[ASN][1000 genomes]
rs7132324	0.86[CHB][hapmap]
rs7299460	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs7303966	0.93[ASW][hapmap];0.87[CEU][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7308216	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7312286	0.85[CHB][hapmap]
rs7970314	0.85[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap]
rs7975675	0.89[EUR][1000 genomes]
rs7976091	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)