SNP Report

Basic Infomation

Name	rs7303966 dbSNP
Location	chr:12,48320109
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10747525	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10783221	0.93[ASW][hapmap];0.87[CEU][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10875697	0.91[EUR][1000 genomes]
rs10875700	1.00[CEU][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs10875701	0.91[EUR][1000 genomes]
rs10875702	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10875704	0.87[CEU][hapmap];0.82[CHD][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs10875705	0.80[EUR][1000 genomes]
rs10875706	0.89[EUR][1000 genomes]
rs10875707	0.89[EUR][1000 genomes]
rs10875708	0.87[CEU][hapmap];0.90[CHD][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs10875709	0.89[EUR][1000 genomes]
rs11168309	0.84[EUR][1000 genomes]
rs11168311	0.93[EUR][1000 genomes]
rs11168313	0.80[EUR][1000 genomes]
rs11168314	0.87[CEU][hapmap];0.90[CHD][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs11168315	0.87[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs11168316	0.87[CEU][hapmap];0.90[CHD][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs11168318	0.87[CEU][hapmap];0.90[CHD][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs11168319	0.87[EUR][1000 genomes]
rs11168320	0.89[EUR][1000 genomes]
rs11568820	1.00[CEU][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11829292	0.91[EUR][1000 genomes]
rs12306963	0.83[EUR][1000 genomes]
rs12831006	0.83[EUR][1000 genomes]
rs34381446	0.80[EUR][1000 genomes]
rs4237855	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs4254129	0.91[EUR][1000 genomes]
rs4334089	0.81[JPT][hapmap]
rs4402365	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4411326	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs4442605	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4454781	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs61920869	0.82[EUR][1000 genomes]
rs61920870	0.91[EUR][1000 genomes]
rs7305180	0.84[CHD][hapmap];0.82[EUR][1000 genomes]
rs7308216	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7970314	0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs7975675	0.89[EUR][1000 genomes]
rs7976091	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
C12orf54	seeQTL
AQP6	SCAN
RAPGEF3	SCAN