SNP Report
Basic Infomation
| Name | rs4334089 dbSNP |
|---|---|
| Location | chr:12,48286015 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875695 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10875700 | 0.81[JPT][hapmap] |
| rs10875702 | 0.84[JPT][hapmap] |
| rs10875708 | 0.82[CHB][hapmap] |
| rs11168314 | 0.82[CHB][hapmap] |
| rs11168315 | 0.81[CHB][hapmap] |
| rs11168316 | 0.82[CHB][hapmap] |
| rs11168318 | 0.82[CHB][hapmap] |
| rs11568820 | 0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs4237855 | 0.84[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs4341603 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4402365 | 0.82[CHB][hapmap];0.83[JPT][hapmap] |
| rs4760655 | 0.81[JPT][hapmap] |
| rs7136534 | 0.90[CEU][hapmap];0.81[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs7302235 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7303966 | 0.81[JPT][hapmap] |
| rs7305180 | 0.81[JPT][hapmap] |
| rs7312286 | 0.81[JPT][hapmap] |
| rs7965397 | 0.88[ASN][1000 genomes] |
| rs7976091 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | RNA binding protein mediated regulation |
| ENSG00000205537 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| TMBIM6 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014