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rVarBase
SNP Report
Basic Infomation
Name
rs4341603  
dbSNP
Location
chr:12,48287209
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10875695
0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4237855
0.82[ASN][1000 genomes]
rs4334089
0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7136534
0.86[EUR][1000 genomes]
rs7302235
0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
VDR
RNA binding protein mediated regulation
ENSG00000205537
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)